In order to simulate large scale biological models with a
reconfigurable FPGA-based biochemical simulator system,
reduction of required resources are essential. This paper
proposes a method which combines common terms in rate
law functions appeared in biochemical models and generates
a shared hardware module used for numerical integration. In
this approach, two functions are combined in a tree structure
level, followed by pipeline scheduling and arithmetic module
binding. The evaluation result reveals that this approach
reduces hardware resources by 31.4 % on average at the cost
of 14.4 % throughput degradation.
内容記述
2007 International Conference on Field Programmable Logic and Applications : Amsterdam, Netherlands, 2007.08.27-2007.08.29
雑誌名
Proceedings 2007 International Conference on Field Programmable Logic and Applications FPL
ページ
808 - 811
発行年
2007-08
DOI
10.1109/FPL.2007.4380774
権利
(c)2007 IEEE. Personal use of this material is permitted. However, permission to reprint/republish this material for advertising or promotional purposes
or for creating new collective works for resale or redistribution to servers or lists, or to reuse any copyrighted component of this work in other works
must be obtained from the IEEE.
フォーマット
application/pdf
著者版フラグ
publisher
出版者
Institute of Electrical and Electronics Engineers
引用
International Conference on Field Programmable Logic and Applications 2007, pp.808-811
A COMBINING TECHNIQUE OF RATE LAW FUNCTIONS FOR A COST-EFFECTIVE RECONFIGURABLE BIOLOGICAL SIMULATOR
ICFPLA2007_808pdf
(207.67KB)
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