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Molecular evolution of respiratory syncytial virus subgroup A genotype NA1 and ON1 attachment glycoprotein (G) gene in central Vietnam
http://hdl.handle.net/10069/37568
http://hdl.handle.net/10069/37568a4142ae1-783b-4275-89fe-afeb94b9eca2
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Supple.pdf (160.2 kB)
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IGE45_437.pdf (762.9 kB)
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2017-12-01 | |||||
タイトル | ||||||
タイトル | Molecular evolution of respiratory syncytial virus subgroup A genotype NA1 and ON1 attachment glycoprotein (G) gene in central Vietnam | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | ARI | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Molecular evolution | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | ON1 | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Paediatric infectious diseases | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | RSV | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Vietnam | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者 |
Yoshihara, Keisuke
× Yoshihara, Keisuke× Le, Minh Nhat× Nagasawa, Koo× Tsukagoshi, Hiroyuki× Nguyen, Hien Anh× Toizumi, Michiko× Moriuchi, Hiroyuki× Hashizume, Masahiro× Ariyoshi, Koya× Dang, Duc Anh× Kimura, Hirokazu× Yoshida, Lay-Myint |
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抄録 | ||||||
内容記述タイプ | Abstract | |||||
内容記述 | We performed molecular evolutionary analyses of the G gene C-terminal 3rd hypervariable region of RSV-A genotypes NA1 and ON1 strains from the paediatric acute respiratory infection patients in central Vietnam during the 2010?2012 study period. Time-scaled phylogenetic analyses were performed using Bayesian Markov Chain Monte Carlo (MCMC) method, and pairwise distances (p-distances) were calculated. Bayesian Skyline Plot (BSP) was constructed to analyze the time-trend relative genetic diversity of central Vietnam RSV-A strains. We also estimated the N-glycosylation sites within G gene hypervariable region. Amino acid substitutions under positive and negative selection pressure were examined using Conservative Single Likelihood Ancestor Counting (SLAC), Fixed Effects Likelihood (FEL), Internal Fixed Effects Likelihood (IFEL) and Mixed Effects Model for Episodic Diversifying Selection (MEME) models. The majority of central Vietnam ON1 strains detected in 2012 were classified into lineage 1 with few positively selected substitutions. As for the Vietnamese NA1 strains, four lineages were circulating during the study period with a few positive selection sites. Shifting patterns of the predominantly circulating NA1 lineage were observed in each year during the investigation period. Median p-distance of central Vietnam NA1 strains was wider (p-distance = 0.028) than that of ON1 (p-distance = 0.012). The molecular evolutionary rate of central Vietnam ON1 strains was estimated to be 2.55 × 10? 2 (substitutions/site/year) and was faster than NA1 (7.12 × 10? 3 (substitutions/site/year)). Interestingly, the evolutionary rates of both genotypes ON1 and NA1 strains from central Vietnam were faster than the global strains respectively. Furthermore, the shifts of N-glycosylation pattern within the G gene 3rd hypervariable region of Vietnamese NA1 strains were observed in each year. BSP analysis indicated the rapid growth of RSV-A effective population size in early 2012. These results suggested that the molecular evolution of RSV-A G gene detected in central Vietnam was fast with unique evolutionary dynamics. | |||||
書誌情報 |
Infection, Genetics and Evolution 巻 45, p. 437-446, 発行日 2016-11 |
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出版者 | ||||||
出版者 | Elsevier B.V. | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 15671348 | |||||
DOI | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | DOI | |||||
関連識別子 | 10.1016/j.meegid.2016.10.010 | |||||
権利 | ||||||
権利情報 | c 2016 Elsevier B.V. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/ | |||||
著者版フラグ | ||||||
出版タイプ | AM | |||||
出版タイプResource | http://purl.org/coar/version/c_ab4af688f83e57aa | |||||
引用 | ||||||
内容記述タイプ | Other | |||||
内容記述 | Infection, Genetics and Evolution, 45, pp.437-446; 2016 |