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An FPGA-Based, Multi-model Simulation Method for Biochemical Systems
http://hdl.handle.net/10069/16326
http://hdl.handle.net/10069/16326366ad0b4-101c-4d56-8f48-3ac0b808f7ee
名前 / ファイル | ライセンス | アクション |
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IEEE_CS23120167a.pdf (95.0 kB)
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Item type | 会議発表論文 / Conference Paper(1) | |||||
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公開日 | 2008-04-08 | |||||
タイトル | ||||||
タイトル | An FPGA-Based, Multi-model Simulation Method for Biochemical Systems | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Biochemical simulation | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | FPGA | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | SBML | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Multimodel | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | ODE | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_5794 | |||||
資源タイプ | conference paper | |||||
著者 |
Osana, Yasunori
× Osana, Yasunori× Fukushima, Tomonori× Yoshimi, Masato× Iwaoka, Yow× Shibata, Yuichiro× Kitano, Hiroaki× Funahashi, Akira× Hiroi, Noriko× Amano, Hideharu |
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抄録 | ||||||
内容記述タイプ | Abstract | |||||
内容記述 | Modeling and simulation of a cellular system on computers are now becoming an essential process in biological researches. However, modern PCs can't provide enough performance to simulate large-scale biochemical networks. ReCSiP is the alternative FPGA-based solution for biochemical simulations. In this paper, the novel method of biochemical simulation with multiple reaction models on an FPGA is proposed. The method generates optimal circuit and its optimal schedule for each simulation models written in SBML, the standard markup language in systems biology. ReCSiP has a Xilinx's XC2VP70 and achieved over 20-fold speedup compared to Intel’s PentiumIII 1.13GHz. | |||||
内容記述 | ||||||
内容記述タイプ | Other | |||||
内容記述 | 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05), April 4-8, 2005, Denver, Colorado | |||||
書誌情報 |
Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS’05) 発行日 2005 |
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ISBN | ||||||
識別子タイプ | ISBN | |||||
関連識別子 | 0769523129 | |||||
書誌レコードID | ||||||
識別子タイプ | NCID | |||||
関連識別子 | BA72080064 | |||||
権利 | ||||||
権利情報 | Copyright(c) 2005 IEEE. Personal use of this material is permitted. However, permission to reprint/republish this material for advertising or promotional purposes or for creating new collective works for resale or redistribution to servers or lists, or to reuse any copyrighted component of this work in other works must be obtained from the IEEE. | |||||
フォーマット | ||||||
内容記述タイプ | Other | |||||
内容記述 | application/pdf | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 | |||||
出版者 | ||||||
出版者 | IEEE Computer Society Press | |||||
資源タイプ | ||||||
内容記述タイプ | Other | |||||
内容記述 | text | |||||
引用 | ||||||
内容記述タイプ | Other | |||||
内容記述 | 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05) Workshop 3 167a ; 2005 |