| アイテムタイプ |
会議発表論文 / Conference Paper(1) |
| 公開日 |
2008-11-20 |
| タイトル |
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|
タイトル |
Practical implementation of a network-based Stochastic biochemical simulation system on an FPGA |
| 言語 |
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|
言語 |
eng |
| 資源タイプ |
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資源タイプ識別子 |
http://purl.org/coar/resource_type/c_5794 |
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資源タイプ |
conference paper |
| 著者 |
Yoshimi, Masato
Nishikawa, Yuri
Osana, Yasunori
Funahashi, Akira
Hiroi, Noriko
Shibata, Yuichiro
Yamada, Hideki
Kitano, Hiroaki
Amano, Hideharu
|
| 抄録 |
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内容記述タイプ |
Abstract |
|
内容記述 |
Stochastic simulation of biochemical reaction networks are widely focused by life scientists to represent stochastic behaviors in cellular processes. Stochastic algorithm has loop-and thread-level parallelism, and it is suitable for running on application specific hardware to achieve high performance with low cost. We have implemented and evaluated the FPGA-based stochastic simulator according to theoretical research of the algorithm. This paper introduces an improved architecture for accelerating a stochastic simulation algorithm called the Next Reaction Method. This new architecture has scalability to various size of FPGA. As the result with a middle-range FPGA, 5.38 times higher throughput was obtained compared to software running on a Core 2 Quad Q6600 2.40GHz. |
| 内容記述 |
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内容記述タイプ |
Other |
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内容記述 |
2008 International Conference on Field Programmable Logic and Applications, FPL; Heidelberg; 8 September 2008 through 10 September 2008 |
| 書誌情報 |
Proceedings - 2008 International Conference on Field Programmable Logic and Applications, FPL
p. 663-666,
発行日 2008-09
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| ISBN |
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識別子タイプ |
ISBN |
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関連識別子 |
978-1-4244-1961-6 |
| DOI |
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関連タイプ |
isIdenticalTo |
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|
識別子タイプ |
DOI |
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関連識別子 |
10.1109/FPL.2008.4630034 |
| 権利 |
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|
権利情報 |
(c)2008 IEEE. Personal use of this material is permitted. However, permission to reprint/republish this material for advertising or promotional purposes or for creating new collective works for resale or redistribution to servers or lists, or to reuse any copyrighted component of this work in other works must be obtained from the IEEE. |
| 著者版フラグ |
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出版タイプ |
VoR |
|
出版タイプResource |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| 出版者 |
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出版者 |
Institute of Electrical and Electronics Engineers |
| 引用 |
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内容記述タイプ |
Other |
|
内容記述 |
2008 International Conference on Field Programmable Logic and Applications, pp.663-666 |
FPL2008_663.pdf (92.5 kB)
